PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05722-abinit-gene-0.0-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ZF-HD
Protein Properties Length: 339aa    MW: 36882.5 Da    PI: 8.6277
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05722-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.49.5e-3568124358
                                           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                                                            v+Y+eClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  augustus_masked-scaffold05722-abinit-gene-0.0-mRNA-1  68 VVTYRECLKNHAASLGGHALDGCGEFMPSQSATpADPTSLKCAACGCHRNFHRREPD 124
                                                           589**************************99999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2469125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.8E-2969123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.4E-3170122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.34871122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.19E-18207276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-29210276IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-23215272IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDLTPTITTT NNTTAINNTA AKSPEAESET PTRIQPSKPL SFSNGVLKRH NPHHHHHHQH  60
HFTSPQLVVT YRECLKNHAA SLGGHALDGC GEFMPSQSAT PADPTSLKCA ACGCHRNFHR  120
REPDDPIPTS QTTHVIEYQP HHRHHPPPPP QPPQSQPQLP LNRSPNSASP PPISSSYFPS  180
SAPHMLLALS GGLSAPPDTP TGHNNAILTP SPNARKRFRT KFSQDQKEKM HQFADSVGWK  240
MQKRDEELVQ EFCNKVGVDK GVLKVWMHNN KNTFGKRDVN GGGAGNSNNI LEHTHNGNNI  300
NSNGNNNSNN NSNLGENLNH YQSDSGAHGG ATNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-192162731875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283533.11e-109PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LHF04e-83ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLF6H5T21e-107F6H5T2_VITVI; Putative uncharacterized protein
STRINGVIT_14s0108g00750.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-80homeobox protein 34